About the data

Cotton FPC-based physical mapping integrated agarose-based fingerprinting and 
HICF. The whole library of 240 384-well-plates was fingerprinted using the 
agarose based method, and a sub-set of clones were selected from the termini 
of the largest agarose-based contigs (two per terminus) for HICF. The final 
assembly integrates information from both approaches.

Both the fingerprint files for the agarose and HICF assembly can be 
downloaded here. Gel images and related files for all agarose fingerprints 
can also be downloaded. The following documents are salient:

(1) Agarose fingerprints (band file), excluding duplicated clones that were 
not used in assembly: cotton_agarose_fingerprints_all.bands

(2) HICF (band file only): cotton_HICF_fingerprints_all.bands

(3) Raw data files from agarose fingerprinting (generated by IMAGE after 
band-calling, repeats included) are listed by the plate number as tarballs 
due to the large file size.

For inquiries regarding fingerprint data, please contact

Andrew Paterson (paterson [at] plantbio.uga.edu)
or
Lifeng Lin (phill [at] uga.edu)

For technical issues regarding data downloading, please contact
Barry Marler (marler [at] uga.edu)