| BLAST2 | chibba | jimbo | troll | |
| BioPerl | chibba | jimbo | troll | |
| BioPython | chibba | jimbo | troll | |
| bioSQUID | jimbo | |||
| BLASTZ | chibba | |||
| BLAT | chibba | |||
| CAP3 | chibba | |||
| ClustalW | chibba | jimbo | troll | |
| ClustalX | chibba | jimbo | troll | |
| BOXSHADE | jimbo | |||
| EMBOSS | chibba | |||
| fastDNAml | chibba | jimbo | ||
| FPC | chibba | marcel | ||
| HMMER | chibba | |||
| IMAGE | marcel | |||
| MISA | chibba | |||
| MOLPHY | chibba | |||
| MUMmer | chibba | |||
| MUSCLE | chibba | |||
| NCBI tools (incl Cn3D, Network Entrez, Sequin, ddv, and udv) | chibba | jimbo | troll | |
| PCAP | chibba | |||
| Phred / Phrap / Cross_match | chibba | jimbo | troll | |
| PHYLIP | chibba | jimbo | troll | |
| PolyBayes | chibba | troll | ||
| R | chibba | |||
| Readseq | chibba | |||
| RepeatMasker | chibba | |||
| SeaView | ||||
| SeqClean | chibba | |||
| T-Coffee | chibba | jimbo | troll | |
| TGICL | chibba | |||
| TREE-PUZZLE | chibba | |||
| TreeViewX | jimbo | |||
| WU BLAST | chibba | |||
| R/qtl | chibba | |||
| Click software titles for descriptions. | ||||